@ltfearme I should have posted this earlier but when I was running it again to gather the info you asked for everything started working correctly.
Thanks to everyone who had a hand in getting...
Ok so every time I run the update from within MediaPortal it makes all the links to videos invalid so selecting any video gives the file missing error message.
I have had no luck with the new version finding new series added to my library. The first time I ran the new version it made all my media seem like it didn't exist so trying to start an episode...