EDIT:
Ah, ok, so when you set your videocard to 1920x1080x32@50, the 1080p sin sity file and the 720p Riddick file start to drop frames, when your videocard is set to 1280x720x32@50, all is ok.
Some extra info: Fast scenes with a lot of movement drop far more frames than slow scenes. (do you have that too?)
Weird...like when the videocard is in 1920x1080 it gets too hard to handle with some files...
I'd have to check this out...(Looking at my hardware, I'm sure my pc can handle all HD material that is thrown at it with ease so that just can't be it)
Indeed not a single 24p origin file should be played back on 50Hz refresh rate (they will 100% sure have some stuttering). But that is not still the reason for the poor performance on some.
Sorry, didn't have time to read the whole thread, but at least many onboard GPUs (maybe even all) lack the power to do deinterlace on HW. Maybe those broken files are interlaced ones?
But as it seems to be resolution dependent (1080p only) I would assume that GPU is bottleneck here. So, if possible try to get some 8600 / 9500 GPU (or some ATI 3xxx / 4xxx) for testing and check if the issue still happens.