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The leds just get 24 bits, 8 bits for each color, and you have to tell your software which color to send first, which second and which last. As Rick said, if you have hyperion set to RGB, and red and blue are wrong, then set it to BGR. After changeing the config file, restart your pi and it works. If it doesnt work, then you are doing something wrong, like chaning the wrong config or maybe forgetting to upload the config. Maybe its read only because hyp is running and you ignored the error msg.