found the issue, comskip wont do H.264 recordings
@echo Please wait For Transcode to complete...
[USER=42607]ping[/USER] localhost -n 3 >nul
echo c:\windows\codecs\FFMPEG -y -i %1 -s 512x384 -f avi -vcodec libxvid -vtag XVID -b 740kb -mbd rd -flags +4mv -cmp 2 -subcmp 2 -sn -g 300 -acodec libmp3lame -ab 128000 -ac 2 -ar 44100 -async 1 "F:\TV\recordings\%~n1.avi">c:\windows\codecs\go11.bat
echo if %~z1 GTR 5000 del %1>>c:\windows\codecs\go11.bat
call c:\windows\codecs\go11.bat
msg /time:8 * Transcode of last recording is complete!